Rust Disease in a Shrimp Tank. Treatment

Rust Disease in a Shrimp Tank. Treatment

Dwarf shrimp can be infected with the many types of bacteria that cause problems with their exoskeleton (shell). One of them is a so-called Chitinolytic bacteria. These bacteria can cause shell disease that also has a lot of other names such as “Brown spot disease”, “Burned spot disease”, “Black spot disease”, and “Rust disease”.

As any crustaceans, dwarf shrimp have a hard exoskeleton (commonly called a shell) that surrounds the outside of their bodies. Even though the shell is pretty rigid and protects the shrimp like a suit of armor, it can still be damaged by some bacteria that can disintegrate it.

Rust disease can be described as a progressive degradation of the shrimp shell. It is characterized externally by the appearance of dark spot lesions in the exoskeleton surface. These exoskeletal erosions are largely attributed to the Chitinolytic bacteria.

In this article, I have gathered all information about Rust disease and how to treat it in our aquariums based on existing official studies, experiments, researches, and experience of aquarists. 

What are Chitinolytic bacteria?

Chitinolytic bacteria are not just one species that can be responsible for Rust disease. Actually, it is a member of several genera including Vibrio, Aeromonas, Pseudomonas, Alteromonas, Flavobacterium, Spirillum, Moraxella, Pasteurella and Photobacterium.

Note: These bacteria are usually associated with shell disease because they possess the enzymechitinase that is capable of degrading carapace chitin.

The origin of this disease is not fully understood. According to the study, biologists initially thought that Rust disease was restricted to the exterior surfaces of the exoskeleton. However, recent studies show that Rust disease is not a disease caused by a single pathogen and solely restricted to the exoskeleton of the crustaceans. With time, it can penetrate into soft tissues of the shrimp.

For example, some studies have demonstrated a role for Chitinolytic bacteria as initiating agents. If left untreated, Rust disease opens the wound that can also harm internal tissues either by the same bacteria or some others.    

Another problem is that dwarf shrimp (like all crustaceans) do not have a specific, adaptive, and long-term ‘memory-based’ immunity system. Their defenses are dependent upon innate immunity that responds to common antigens on the cell surfaces of potential pathogens.

Basically, it means that shrimp cannot become immune to disease through vaccination. It can be a real problem in aquaculture ponds where dwarf shrimp are bred in captivity.

How to Identify Rust Disease. The symptoms

Dwarf shrimp have a heavily calcified body (exoskeleton or shell), that provides an effective physical barrier against pathogens that try to penetrate the outer surface of crustaceans. However, when Rust disease starts taking place you will notice dark spots and eroded wounds on the exoskeleton and appendages.

These dark spots can be often observed on abdominal appendages and carapace (including gill filaments). The black coloration of the lesions is a result of melanisation – a defense (immune) response triggered by the damage of the shell

In severe cases of Rust disease, the shrimp’s appearance is studded with symptoms of weakness, anorexia, loss of limbs, lower fecundity, and finally mortality.

Stages of Rust Disease

This disease goes through 3 stages:

  1. Incubation period.
  2. Shell degradation.
  3. Damage of the internal organs.

Incubation period

When Chitinolytic bacteria invade a shrimp, Rust disease undergoes a series of phases that eventually lead to the multiplication of the pathogen.

The main problem of the incubation period is the first stage of the disease process before symptoms become even apparent. Another problem is that there is no information about this period at all. I could not find any documented reports or studies regarding the incubation period and how long it can last.

The only thing that I found is that temperature plays an important role for the Rust disease. For example, the water temperature at 28°C (82 F) has enhanced the shell diseases.

Shell Degradation

In the early stages the Rust disease commences as a small, darkened, sometimes friable, or cratered area on the shrimp body. We can see lesions appear as small, shallow discolored depressions which are thought to be the result of superficial damage or simply color marks.

As the disease progresses, shell degradation increases in size and extends into the lower layers of the skin.

Damage of the Internal Organs.

Eventually, the lesions penetrate into the soft underlying tissues of the shrimp. As a result, these wounds have direct contact with the organs of the shrimp that can/will become infected either by Chitinolytic or some kind of other bacteria.

Is Rust Disease Dangerous to the Shrimp?

The short answer is definitely yes! Not immediately fatal, Rust disease is still extremely dangerous to any crustaceans including shrimp.

Rust disease may cause a range of problems such as:

  • growth retardation,
  • inability to molt (basically, it fuses two molt shells (new and old one) at the lesion site),
  • infections in the blood,
  • segments of affected appendages may be lost,
  • deformities in the new shell,
  • exposed internal organs and open wounds make shrimp a lot more vulnerable to further infections,
  • high mortality.

Overall, Rust shell disease should not be considered as only a shell disease.

Note: Rust disease is not just a problem for the aquarium hobby. In reality, it has a huge impact on commercial farming of shrimp, crabs, and lobsters.

Luckily, early stages of the disease may be lost at molt (when shrimp are shedding the old shell). That is why the younger is the shrimp, the more chances it has to survive. The incidence and severity of the condition can increase when molting is infrequent. So, adult shrimp that have undergone a terminal molt would exhibit high levels of the disease.

Name Chitinolytic bacteria
Type Disease
Threat level High
Treatment difficulty Moderate to Difficult
Treatment efficiency Not 100%
Treatment length 1-5 days 

Is Rust Disease Contagious?

Yes, rust disease is contagious. If left untreated, it may progressively affect the entire population of the shrimp colony.
The rate of mortality is directly related to the degree of infection or exposure to it.

What Causes Rust Disease?

Although in certain situations the reasons for elevated levels of shell disease are intuitive, poor water conditions, dirt in the aquarium, overstocking, and small injuries are believed to be the main causes of Rust disease in shrimp aquariums.  

Note: Several studies reported that in natural populations the disease is significantly lower compared to farms, where crustaceans are often overstocked.  

How to Treat Rust Disease in a Shrimp Tank

Thanks to shrimp breeders who attempt to resolve this issue we now have some successful treatment using hydrogen peroxide (H2O2). Unfortunately, it is possible to treat Rust disease only in the early stages. However, no guarantee can be given even then.

Warning: DO NOT overdose. Check and double-check your calculations. Overdosing can kill your shrimp and beneficial bacteria. Remove any decorative snails from the tank; hydrogen peroxide is very dangerous to them.

shrimp tank Hydrogen Peroxide

  1. Turn the filter off in the tank! 
    Note: Ideally, I would recommend you to remove filter media so that beneficial bacteria will not be affected. In this case, you can keep the filter running for additional water flow. Take some water from the tank and put filter media there.
  2. Increase aeration.
    Note: Hydrogen peroxide is very powerful stuff. Aquarists often use it to quarantine plants, remove different types of algae or even parasites (like Hydra, pest snails, etc.). It is very important to know and remember that when the algae, and/or parasites also start to die off, they will begin to decompose. This process will absorb lots of oxygen. Depending on the situation, it can even suffocate your fish or shrimp.
  3. Turn the lights off. (It will improve the treatment efficiency. The decomposition of H2O2 happens much faster in the presence of light.).
  4. Use 3% Hydrogen peroxide at 1.5ml per gallon or per 4.5 liters.
  5. Evenly spread H2O2 across the surface of the aquarium.
  6. Gently stir the water to spread it.
  7. Wait 1 hour.
  8. Turn the lighting and filter on (or put the filter media back if you took it out).
  9. Repeat the procedure at least 3 days in a row.
  10. Important: The same week do a water change and add your favorite bacterial supplement back to the tank.

You will notice that the dark spots are losing their color. Until the rusty brown spots are completely gone.

Potential problems: Overdose Hydrogen peroxide will harm the shrimp and fish. Their gills are very sensitive. Moss balls cannot tolerate hydrogen peroxide at all. Some plants like MossesVallisneriaBucephalandra, etc. can melt. Many other plant species respond well.

Hydrogen peroxide – check out the price on Amazon

Is it Possible to Treat Shrimp Individually?

Sometimes people are very cautious and do not want to use Hydrogen peroxide or any other powerful oxidizers in their aquariums. So, can we do the same but in a quarantine tank?

Of course, we can. The only problem is that by curing the infected shrimp we leave Chitinolytic bacteria in the water column. So, there is a risk that it can infect other shrimp. 

Are There Other Ways to Treat It?

 Some articles mention something like:

  • Increase the pH of the tank water,
  • Add a small amount of aquarium salt to the isolated shrimp,
  • Decrease water temperature, etc.

Well, this is a total bull sh…, It will not work. Even more, changes in water temperature and pH can shock your shrimp and kill it even faster than Rust disease. Salt will not help either, Chitinolytic bacteria thrive in marine water as well, they do not care about salt. 

Is It Possible to Prevent Rust Disease?

So far, there is no single compound or strategy that can guarantee a solution to the problem of disease and for long-lasting protection in our shrimp aquariums.

We can only hope that:

  • good hygiene,
  • high water quality
  • regular maintenance,
  • proper stock density,
  • quarantine any newly bought shrimp.

should reduce the chances of Rust disease in the tanks. 

In conclusion

Rust disease is not a disease caused by one type of bacteria and should not be considered a disease solely restricted to the exoskeleton. The threat is more serious. Many bacteria are capable of degradation of the chitin component of the shrimp shell that can infect the internal organs. This may ultimately lead to the death of the shrimp.

No one likes to think about their shrimp getting Rust disease that can potentially contaminate and kill your shrimp colony. The good thing though is that nowadays we know how to treat it!

In any case, it is very important for you to be informed, understand what signs and symptoms to look for, and most importantly how you can treat your shrimp from the Rust diseases. 

Related articles:

Understanding Dwarf Shrimp Diseases and Parasites.  


  1. Bacterial diseases of crabs: A review. Journal of Invertebrate Pathology. 106 (2011) 18–26.
  2. Chitinolytic bacterial disease infected in Scylla serrta (forsskal 1775) fattening farm of Tamil Nadu. Science Inventions Today. Volume 6, Issue 6, November-December 2017.
  3. A histological study of shell disease syndrome in the edible crab Cancer pagurus. Diseases of aquatic organisms. Vol. 47: 209–217, 2001.
  4. Synopsis of Freshwater Crayfish Diseases and Commensal Organisms. (2002). Faculty Publications from the Harold W. Manter Laboratory of Parasitology. 884
  5. Bacterial shell disease of crustaceans. Ministry of Agriculture, Fisheries, and Food. Leaflet № 31
  6. Control of Pathogenic Vibrios in Shrimp Aquaculture using Antiinfectives from Marine Natural Products. 2015
  7. Shell disease syndrome in the edible crab, Cancer pagurus – isolation, characterization, and pathogenicity of chitinolytic bacteria. Microbiology148 (Pt 3):743-54 · March 2002
  8. Lobster diseases. Helgol~inder Meeresunters. 37, 243-254 (1984).
  9. Shell disease in crustaceans – just chitin recycling gone wrong? Environmental Microbiology (2008).
  10. Shrimp Bacterial Infections in Latin America: A Review. Asian Fisheries Science 31S (2018): 76–87

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16 thoughts on “Rust Disease in a Shrimp Tank. Treatment

    1. Hi May,
      Actually, thank you! 🙂
      As you can see I used the results of the treatment and finally finished the article.
      Our dialog may sound strange for some readers but … we have been in contact for some time, so May also shared with her results and provided some other useful information.
      Best regards,

  1. I used to do once a month 1.5ml H2O2 3% treatments to all my shrimp tanks prior to moving! Never had any problems! It’s been 6 months since we moved and I have not done these treatments, and I have just found two cases of rust in my pinto tank!!! Time to treat all tanks! Good Lord!! Why did I get so complacent!
    Also H2O2 breaks down eventually into water and oxygen does it not? Which should increase O2 in the tank for a short period of time was my understanding of the process, thus messing up the bacteria (whom dislike added O2) and give the shrimps the zoomies. Fingers crossed I don’t lose my two best red zebra pinto males!

    1. Hi Leahh Potyok,
      Thank you for the feedback!
      Although it is a very nasty disease, I am a little bit cautious to treat tanks on a regular basis, as you do.
      Nonetheless, I don’t think that it can mess up the bacteria. The concentration is too low for that.
      Best regards,

  2. Hi so I just tried this in my 10 gallon lightly planted shrimp tank. I put in the suggested amount and waited one hour with the lights off. I hooked the filter back up and turned on the lights. However, the tank was quickly overrun with bubbles. The shrimp seem fine, but I feel really concerned that I may have done something wrong. Are the bubbles normal? What can I do to stop them?

    1. Hi Madeline Hook,
      This is normal. It breaks down into water and oxygen.
      Best regards,

  3. Oh. My. Gerd. This wiped out an entire colony and I had no clue that is what this was.
    You are amazing!
    Thank you for publishing this!
    I’ll know next time!

    1. Hi Shelly DeCorte,
      Sorry to hear that.
      I hope you won’t have these problems in the future.
      Best regards,

  4. Hi!
    I think I have a few cases of this in my black rili tank. I also have a pom pom crab with them. Is it safe for the crab to stay during this treatment or should he be removed first?

    1. Hi Tiffany,
      I have never used hydrogen peroxide with Pom pom crabs. So, I cannot give you a clear answer.
      In my opinion, they should be OK. However, if you have a choice, it will be better to move them during treatment.
      Best regards,

  5. Hi Michael,
    Are you using US gallons or UK gallons?

  6. Hi Micheal!
    So today I spotted that number of my shrimp have black coloration across their bodies, but Ii doesnt have really have any depression as you said or it is no really same Like you show on pictures it is just black coloration on bloody marry shrimp. I would Like to know your opinion please contact me so I can send you photo. Thanks for an article !

    1. Hi Daniel,
      Are there any changes? Check you email, please.
      Best regards,

  7. I have been trying this treatment and I feel like it is not working. Was dosing the whole tank daily but after a couple (possibly unrelated) deaths and no improvement I switched to isolating the most symptomatic shrimp and treating them separately. Would it be safe to dose the tank daily over what might be weeks? Improvement is still slow (molting seems to improve it). Now noticing more shrimps in the main tank with what looks like rust spots. Any ideas?

    5 gallon with neos and plants. Also doing daily small water changes to lower my TDS but have noticed rust spots even prior to that. Haven’t added plants or livestock for months now so not sure what could have triggered it.

    sorry if this sends twice!

    1. Hi Alex,
      I’m sorry it turned out that way for you.
      These methods are indeed effective, but like all methods, they may have their limits. It’s possible that the affected area on the shrimp was already too large and/or deep, resulting in reduced effectiveness.
      As for prolonged treatment of the entire aquarium, generally, if you take reasonable breaks, there shouldn’t be any issues because H2O2 breaks down in water quite quickly.
      Best regards,

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